Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs112906228 chr2:70448602 C/CA 0 177 15.4 17.4 1.03 KM Plot
PAAD rs112909131 chr11:125581436 C/T 0.000112 177 16.08 14.18 5.03 KM Plot
PAAD rs112973746 chr5:94610330 C/CTTTTTTTCTT 2.58E-8 174 2.15 19.47 14.33 KM Plot
PAAD rs113005557 chr2:70457302 A/G 0 178 15.33 18.43 1.03 KM Plot
PAAD rs11310703 chr10:85799921 AG/A 9.72E-13 177 15.67 9.57 1.37 KM Plot
PAAD rs113169655 chr2:70479680 A/G 0 178 15.37 17.4 1.03 KM Plot
PAAD rs113190745 chr21:44065912 T/C 1.39E-12 173 15.42 16.15 1.37 KM Plot
PAAD rs11319434 chr16:1414668 TG/T 1.53E-5 176 3.67 15.72 15.4 KM Plot
PAAD rs113197365 chr2:70427696 G/A 0 175 15.42 18.43 1.03 KM Plot
PAAD rs1132356 chr16:1394507 A/C 1.29E-5 178 3.67 15.55 15.43 KM Plot
PAAD rs113280398 chr2:70457205 T/C 0 178 15.33 18.43 1.03 KM Plot
PAAD rs113294826 chr2:128499832 T/C 7.9E-10 178 15.62 12.6 2.2 KM Plot
PAAD rs113309908 chr2:70525389 T/C 0 178 15.37 17.4 1.03 KM Plot
PAAD rs113316864 chr2:70458358 C/T 0 178 15.37 17.4 1.03 KM Plot
PAAD rs113369630 chr15:78312057 C/T 0 178 15.48 17.4 1.03 KM Plot